Hee Shin Kim
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Education

M.S. in Bioinformatics, University of Illinois at Urbana-Champaign. (2005-2007)
Advisor : Dr. Gustavo Caetano-Anolles

B.S. in Computer Science, University of Illinois at Urbana-Champaign. (2000-2004)

Research Interest

Epigenomics, iPS Cell, High-Througput Analysis (tiling array analysis..), Biological Database Design, Developing Softwares

 

Publications

Kim HS, Murphy T, Xia J, Caragea D, Park Y, Beeman RW, Lorenzen MD, Manak JR, Butcher S, and Brown S. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum Nucleic Acid Res. in press.

Caetano-Anollˇs G, Yafremava LS, H Gee, Caetano-Anollees D, Kim HS, Mittenthal JE. The origin and evolution of modern metabolism. International J Biochemistry & Cell Biology 2009, 41:285-297.

Caetano-Anollˇs G, SunF-J, Wang M, Yafremava LS, Harish A, Kim HS, Knudsen V, Caetano-Anolles D, Mittenthal JE. Origins and evolution of modern biochemistry: insights from genomes and molecular structure. Frontiers in Bioscience 2008, 13: 5212-5240.

Caetano-Anolles G., Kim HS, Mittenthal J.E. The origin of modern metabolic networks inferred from phylogenomic analysis of protein architecture. Proc. Natl. Acad. Sci. USA 2007, 10: 9358-9363. [Abstract][Full Text]

Kim, HS, Mittenthal JE, Caetano-Anolles G. MANET: tracing evolution of protein architecture in metabolic networks. BMC Bioinformatics 2006, 7:351. [Abstract][Full Text]

Research Presentation

Poster, MANET: tracing evolution of protein architecture in metabolic networks. 2006, Annual meeting of the Society of Molecular Biology and Evolution, Arizona State University

Abstracts

Merzendorfe, H, Kim HS, Specht CA, Beeman RW, Kramer K, Muthukrishnan S. 2009. Diflubenzuron effects in Tribolium castaneum: a comprehensive study including proteomic and genomic approaches. The 3rd Annual Arthropod Genomics Symposium, Kansas State University.

Caetano-Anolles G, Kim HS, and Mittenthal JE. The origins of modern metabolism revealed by phylogenomic analysis of protein structure. 2006, Annual meeting of the Society of Molecular Biology and Evolution, Arizona State University.

Caetano-Anolles G, Hwang S, Kim HS, Sharpe C, Boca SM, Caetano-Anolles D, Waddell T, and Mittenthal JE. 2005. Evolution of protein architecture: structural phylogenomics. Evolution 2005, Meeting of the Society of Systematic Biologists, Fairbanks, Alaska.

Caetano-Anolles G, Hwang S, Kim HS, Wang M, Sharpe C, Boca SM, Caetano-Anolls D, Waddell T, and Mittenthal JE. 2005. Evolution of the protein world: a phylogenomic perspective. 5th Understanding Complex Systems: Computational complexity and bioinformatics, Urbana, IL.

Caetano-Anolles G, Hwang S, Sun FJ, Kim HS, Harish A, and Mittenthal JE. 2004. Bioinformatics, structural genomics, and molecular evolution: developing global tools for the study of plant and microbial systems in interaction. 21st Latinoamerican Rhizobiology Meeting and 1st National Meeting on Nitrogen Fixation, Rio de Janeiro, Brazil.

Computer Skills (Advanced)

Programming: Perl, Java, C/C++, OpenGL, Visual Basic.NET, ASP, PHP

Database: MySQL, MS-SQL, Oracle

Operating Systems: MS Windows 98//2000/NT/XP, Unix, Linux, Mac OSX

Applications: SAS, MS Office

Work Experience

Bioinformatics/Computer Specialist, Bioinfomatics Center at Kansas State University (2007,9-present)

Graduate Research Assistant, University of Illinois at Urbana-Champaign, (2005.8-2007.8)

Research Programmer, University of Illinois at Urbana-Champaign, (2004.8-2005.8)

Undergraduate Research Assistant, University of Illinois at Urbana-Champaign, (2003.5-2004.8)


 

Hee Shin Kim (heekim1@uiuc.edu) Sep 2009