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1. Caetano-Anolles, G. , Kim, H.S., Mittenthal, J.E. (2007) The origins of modern metabolic networks inferred from phylogenomic analysis of protein structure. Proceeding of the National Academy of Sciences USA 104: 9358-9363. [Abstract][Full Text].
2. Wang M and Caetano-Anollés (2006) Global phylogeny determined by the combination of protein domains in proteomes. Molecular Biology and Evolution 23: 2444-2453. [Abstract][Full Text].
3. Kim, H.S., Mittenthal, J.E., Caetano-Anolles, G. (2006) MANET: tracing evolution of protein architecture in metabolic networks. BMC Bioinformatics 7:351. [Abstract][Full Text].
4. Wang, M., Boca, S.M., Kalelkas, R., Mittenthal, J.E., and Caetano-Anolles, G. (2006) A phylogenomics reconstruction of the protein world based on a genomic census of protein fold architecture. Complexity 12, 27–40. Full Text (pdf)
5. Caetano-Anolles, G., Caetano-Anolles, D. (2005) Universal sharing patterns in proteomes and evolution of protein fold architecture and life. Journal of Molecular Evolution 60:484-498. Full Text (pdf)
6. Caetano-Anolles, G. (2004) Protein evolution: charting the universe of macromolecular structure. Chemistry Today 21: 20-22. Full Text (pdf)
7. Caetano-Anolles, G., Caetano-Anolles, D. (2003) An evolutionarily structured universe of protein architecture. Genome Research 13: 1563-1571. Full Text (pdf)
8. Sun F-J, Caetano-Anolles G (2009) The evolutionary history of the structure of 5S ribosomal RNA. Ms. submitted. Online supplementary material (pdf)
9. Aziz, M.F., Chan, P., Osorio, J.S., Minhas, B.F., Parekatt, V., and Caetano-Anolles, G. (2012) Stress induces biphasic-rewiring and modularization patterns in the metabolomic networks of Escherichia coli. The 2012 IEEE International Conference on BioInformation and BioMedicine (BIBM 2012). [Full Text] [Online supplementary material (pdf)] [Network Images (html)] [Network Animated (html)].
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